Orbot flushes all foreign iptables rules
Regardless of whether transparency proxy is enabled or not, all foreign iptables rules get flushed when connecting or disconnecting to/from Tor.
Iptables chains stay untouched.
This is a big problem when using iptables based firewalls like "DroidWall" or "LBE Privacy Guard".
Example 1: A internet access blocked application (a game, google location service, etc.) gets unblocked as soon as Orbot connects/disconnects to Tor.
Example 2: A application should just be able to communicate through Tor. iptables related firewall blocks it. But Orbot's transparency proxy should allow it.
This still occures on the latest RC build: "Orbot-1.0.6-Tor-0.2.3.7-alpha-RC3"